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collect contig alignment + renew_utg bug fixed
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@@ -0,0 +1,14 @@
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#ifndef __HORDER__
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#define __HORDER__
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#include <stdint.h>
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#include "hic.h"
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typedef struct {
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kvec_pe_hit r_hits, u_hits;
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ma_ug_t* ug;
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asg_t* r_g;
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}horder_t;
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horder_t *init_horder_t(kvec_pe_hit *i_hits, uint64_t i_hits_uid_bits, uint64_t i_hits_pos_mode,
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asg_t *i_rg, ma_ug_t* i_ug, bubble_type* bub, ug_opt_t *opt);
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void destory_horder_t(horder_t **h);
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#endif
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