collect contig alignment + renew_utg bug fixed

This commit is contained in:
chhylp123
2021-05-09 17:47:50 -04:00
parent 03adce6202
commit 7918396d21
7 changed files with 431 additions and 19 deletions
+14
View File
@@ -0,0 +1,14 @@
#ifndef __HORDER__
#define __HORDER__
#include <stdint.h>
#include "hic.h"
typedef struct {
kvec_pe_hit r_hits, u_hits;
ma_ug_t* ug;
asg_t* r_g;
}horder_t;
horder_t *init_horder_t(kvec_pe_hit *i_hits, uint64_t i_hits_uid_bits, uint64_t i_hits_pos_mode,
asg_t *i_rg, ma_ug_t* i_ug, bubble_type* bub, ug_opt_t *opt);
void destory_horder_t(horder_t **h);
#endif