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update readme
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11
README.md
11
README.md
@@ -48,6 +48,7 @@ See [tutorial][tutorial] for more details.
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- [Why Hifiasm?](#why)
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- [Usage](#use)
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- [Assembling HiFi reads without additional data types](#hifionly)
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- [Assembling ONT reads](#ontonly)
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- [Hi-C integration](#hic)
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- [Trio binning](#trio)
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- [Ultra-long ONT integration](#ul)
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@@ -119,6 +120,16 @@ bloom filter which takes 16GB memory at the beginning. For genomes much larger
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than human, applying `-f38` or even `-f39` is preferred to save memory on k-mer
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counting.
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### <a name="ontonly"></a>Assembling ONT reads
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Since version 0.21.0 (r686), hifiasm can support ONT assembly using ONT simplex R10 reads.
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To enable this feature, add the `--ont` option as shown below:
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```sh
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hifiasm -t64 --ont -o ONT.asm ONT.read.fastq.gz
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```
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Please note that this module requires input reads in FASTQ format.
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### <a name="hic"></a>Hi-C integration
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Hifiasm can generate a pair of haplotype-resolved assemblies with paired-end
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