diff --git a/README.md b/README.md index 4a8eeef..cd34d7e 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ cd hifiasm && make # Run on test data (use -f0 for small datasets) wget https://github.com/chhylp123/hifiasm/releases/download/v0.7/chr11-2M.fa.gz ./hifiasm -o test -t4 -f0 chr11-2M.fa.gz 2> test.log -awk '/^S/{print ">"$1;print $2}' test.p_ctg.gfa > test.p_ctg.fa # get primary contigs in FASTA +awk '/^S/{print ">"$2;print $3}' test.p_ctg.gfa > test.p_ctg.fa # get primary contigs in FASTA # Assemble inbred/homozygous genomes (-l0 disables duplication purging) hifiasm -o CHM13.asm -t32 -l0 CHM13-HiFi.fa.gz 2> CHM13.asm.log