xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-02 15:28:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r495-reuse misjoin detection

Browse Source
This commit is contained in:
chhylp123
2023-01-12 00:21:43 -05:00
parent 0613b18af9
commit 7ad498f631
3 changed files with 20 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files
hic.cpp
+1 -1
View File
@@ -16746,7 +16746,7 @@ int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx, ug_o
////dedup_hits(&(sl.hits), sl.idx);
///write_hc_hits_v14(&sl.hits, asm_opt.output_file_name);
if(asm_opt.misjoin_len > 0)
if(asm_opt.misjoin_len > 0/** && (!(asm_opt.ar))**/)//disable it for the UL assembly
{
update_switch_unitig(idx->ug, idx->read_g, &(sl.hits), &(idx->t_ch->k_trans), 10, 20, asm_opt.misjoin_len, 0.15);
renew_idx_para(idx, idx->ug);