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chhylp123
2022-08-28 02:39:05 -04:00
parent 8b7ca5f0c3
commit 7b89478b2e
10 changed files with 1206 additions and 93 deletions
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Correct.h
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@@ -1131,6 +1131,13 @@ void correct_ul_overlap(overlap_region_alloc* overlap_list, const ul_idx_t *uref
int force_repeat, int is_consensus, int* fully_cov, int* abnormal,
double max_ov_diff_ec, long long winLen, void *km);
void lchain_align(overlap_region_alloc* overlap_list, const ul_idx_t *uref,
UC_Read* g_read, Correct_dumy* dumy, UC_Read* overlap_read,
Graph* g, Graph* DAGCon, Cigar_record* current_cigar,
haplotype_evdience_alloc* hap, Round2_alignment* second_round,
kvec_t_u64_warp* v_idx, window_list_alloc* win_ciagr_buf,
int force_repeat, int is_consensus, int* fully_cov, int* abnormal,
double max_ov_diff_ec, long long winLen, void *km);
/***
type:
0. match