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code clean

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chhylp123
2022-08-28 02:39:05 -04:00
parent 8b7ca5f0c3
commit 7b89478b2e
10 changed files with 1206 additions and 93 deletions
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Hash_Table.h
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@@ -187,6 +187,11 @@ void clear_window_list_alloc(window_list_alloc* x);
void destory_window_list_alloc(window_list_alloc* x);
void resize_window_list_alloc(window_list_alloc* x, uint64_t size);
long long chain_DP(k_mer_hit* a, long long a_n, Chain_Data* dp, overlap_region* result, double band_width_threshold, int max_skip, int x_readLen, int y_readLen, void *km);
uint64_t lchain_dp(k_mer_hit* a, int64_t a_n, k_mer_hit* des, Chain_Data* dp, overlap_region* res,
int64_t max_skip, int64_t max_iter, int64_t max_dis, double chn_pen_gap, double chn_pen_skip, double bw_rate,
int64_t xl, int64_t yl, int64_t quick_check);
int ovlp_chain_gen(overlap_region_alloc* ol, overlap_region* t, int64_t xl, int64_t yl, int64_t apend_be);
int append_utg_inexact_overlap_region_alloc(overlap_region_alloc* list, overlap_region* tmp,
ma_utg_v *ua, int add_beg_end, void *km);
#endif