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Fix bug

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This commit is contained in:
Haoyu Cheng
2019-05-17 00:52:10 -04:00
parent 17553e0a42
commit 7cebaf271b
11 changed files with 55 additions and 16 deletions
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Assembly.cpp
+24 -6
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@@ -400,18 +400,29 @@ void Build_hash_table_multiple_thr()
{
write_Total_Pos_Table(&PCB, read_file_name);
destory_Total_Pos_Table(&PCB);
load_Total_Pos_Table(&PCB, read_file_name);
///load_Total_Pos_Table(&PCB, read_file_name);
write_All_reads(&R_INF, read_file_name);
destory_All_reads(&R_INF);
load_All_reads(&R_INF, read_file_name);
///load_All_reads(&R_INF, read_file_name);
}
}
int load_pre_cauculated_index()
{
if(load_Total_Pos_Table(&PCB, read_file_name) && load_All_reads(&R_INF, read_file_name))
{
return 1;
}
else
{
return 0;
}
}
/********************************for debug***************************************/
@@ -508,15 +519,18 @@ void verify_Position_hash_table()
while (get_read(seq))
{
if (seq->seq.l
!= Get_READ_LENGTH(R_INF, read_number))
{
fprintf(stderr, "seq error\n");
}
recover_UC_Read(&g_read, &R_INF, read_number);
if(memcmp(seq->seq.s, g_read.seq, seq->seq.l))
{
fprintf(stderr, "\nseq error ID: %llu, length: %llu\n",read_number, seq->seq.l);
@@ -536,7 +550,6 @@ void verify_Position_hash_table()
}
init_HPC_seq(&HPC_read, seq->seq.s, seq->seq.l);
init_Hash_code(&k_code);
@@ -545,6 +558,8 @@ void verify_Position_hash_table()
while ((code = get_HPC_code(&HPC_read)) != 6)
{
if(code < 4)
{
k_mer_append(&k_code,code,k_mer_length);
@@ -552,14 +567,17 @@ void verify_Position_hash_table()
if (avalible_k>=k_mer_length)
{
uint64_t count1 = get_Total_Count_Table(&TCB, &k_code, k_mer_length);
///uint64_t count1 = get_Total_Count_Table(&TCB, &k_code, k_mer_length);
uint64_t count2 = count_Total_Pos_Table(&PCB, &k_code, k_mer_length);
/**
if(count1>=k_mer_min_freq && count1<= k_mer_max_freq && count1!=count2)
{
fprintf(stderr, "count1: %lld\n",count1);
fprintf(stderr, "count2: %lld\n",count2);
}
**/
if(locate_Total_Pos_Table(&PCB, &k_code, &list, k_mer_length, &sub_ID) == count2)
{