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chhylp123
2021-09-26 13:51:13 -04:00
parent ed814abf35
commit 7dd4a848b9
13 changed files with 2747 additions and 61 deletions
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4
CommandLines.cpp
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@@ -157,6 +157,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->hic_enzymes = NULL;
asm_opt->hic_reads[0] = NULL;
asm_opt->hic_reads[1] = NULL;
asm_opt->fn_bin_poy = NULL;
asm_opt->ar = NULL;
asm_opt->thread_num = 1;
asm_opt->k_mer_length = 51;
@@ -654,7 +655,7 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
int c;
while ((c = ketopt(&opt, argc, argv, 1, "hvt:o:k:w:m:n:r:a:b:z:x:y:p:c:d:M:P:if:D:FN:1:2:3:4:l:s:O:eu", long_options)) >= 0) {
while ((c = ketopt(&opt, argc, argv, 1, "hvt:o:k:w:m:n:r:a:b:z:x:y:p:c:d:M:P:if:D:FN:1:2:3:4:5:l:s:O:eu", long_options)) >= 0) {
if (c == 'h')
{
Print_H(asm_opt);
@@ -684,6 +685,7 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
else if (c == '2' || c == 'M') asm_opt->fn_bin_yak[1] = opt.arg;
else if (c == '3') asm_opt->fn_bin_list[0] = opt.arg;
else if (c == '4') asm_opt->fn_bin_list[1] = opt.arg;
else if (c == '5') asm_opt->fn_bin_poy = opt.arg;
else if (c == 'x') asm_opt->max_drop_rate = atof(opt.arg);
else if (c == 'y') asm_opt->min_drop_rate = atof(opt.arg);
else if (c == 'p') asm_opt->small_pop_bubble_size = atoll(opt.arg);