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chhylp123
2021-09-26 13:51:13 -04:00
parent ed814abf35
commit 7dd4a848b9
13 changed files with 2747 additions and 61 deletions
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tovlp.cpp
+4 -2
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@@ -968,7 +968,7 @@ pdq *pq_p, pdq *pq_a, uint8_t fp, uint8_t fa, long long *d)
for (i = 0; i < ns; i++)
{
if(as[i].del || as[i].v == sv) continue;
nc = dfs_set(g, as[i].v, s>>1, stack, tt, vis, fa);
nc = dfs_set(g, as[i].v, s>>1, stack, tt, vis, fa);///nc > 0 means as[i].v and sv have common suffix
if(nc && check_trans_relation_by_path(sv, as[i].v, pq_p, NULL, NULL, pq_a, NULL, NULL, g,
vis, fp+fa, nc, 0.45, d))
{
@@ -1100,11 +1100,12 @@ int get_min_dec(clean_mul_t *cl, uint32_t positive_flag, uint32_t negative_flag,
clean_t *p = NULL;
(*v) = (uint32_t)-1;
for (i = 0; i < cl->n; i++) cl->a[i].is_b = 0, cl->a[i].min_v = (uint32_t)-1;
kt_for(cl->n, bub_iden_worker, cl, cl->g->n_seq<<1);
kt_for(cl->n, bub_iden_worker, cl, cl->g->n_seq<<1);///fast check if there are bubbles in graph
for (i = 0; i < cl->n; i++)
{
if(cl->a[i].is_b) ///pop bubble
{
///pop all bubbles
n_pop = asg_pop_bubble_primary_trio(cl->g, cl->ug, cl->bs_flag, &(cl->a[i].b),
cl->max_dist, positive_flag, negative_flag, o);
if(n_pop ==0) fprintf(stderr, "ERROR-n_pop\n");
@@ -1116,6 +1117,7 @@ int get_min_dec(clean_mul_t *cl, uint32_t positive_flag, uint32_t negative_flag,
{
if(cl->a[i].min_v == (uint32_t)-1) continue;
// if(b->min_v == (uint32_t)-1 || (b->min_d > d) || (b->min_d == d && b->min_v < eid))
///looks like select the minum node, and back
if(!p || p->min_d > cl->a[i].min_d ||
(p->min_d == cl->a[i].min_d && cl->g->seq[p->min_v>>1].len > cl->g->seq[cl->a[i].min_v>>1].len) ||
(p->min_d == cl->a[i].min_d && cl->g->seq[p->min_v>>1].len == cl->g->seq[cl->a[i].min_v>>1].len && p->min_v > cl->a[i].min_v))