From 7e855ba5e2bbee2ec67ab1929d5440267680d78b Mon Sep 17 00:00:00 2001
From: chhylp123 <hcheng@jimmy.harvard.edu>
Date: Thu, 6 Apr 2023 23:16:59 -0400
Subject: [PATCH] update README

---
 README.md | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/README.md b/README.md
index b3babde..feb540e 100644
--- a/README.md
+++ b/README.md
@@ -22,6 +22,9 @@ hifiasm -o HG002.asm --h1 read1.fq.gz --h2 read2.fq.gz HG002-HiFi.fq.gz
 yak count -b37 -t16 -o pat.yak <(cat pat_1.fq.gz pat_2.fq.gz) <(cat pat_1.fq.gz pat_2.fq.gz)
 yak count -b37 -t16 -o mat.yak <(cat mat_1.fq.gz mat_2.fq.gz) <(cat mat_1.fq.gz mat_2.fq.gz)
 hifiasm -o HG002.asm -t32 -1 pat.yak -2 mat.yak HG002-HiFi.fa.gz
+
+# Single-sample telomere-to-telomere assembly with HiFi, ultralong and Hi-C reads
+hifiasm -o HG002.asm --h1 read1.fq.gz --h2 read2.fq.gz --ul ul.fq.gz HG002-HiFi.fq.gz
 ```
 See [tutorial][tutorial] for more details.