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expose purge_dups

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chhylp123
2020-04-18 00:45:47 -04:00
parent 85c57fd087
commit 7f6725ead3
6 changed files with 117 additions and 36 deletions
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Purge_Dups.h
+2 -3
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@@ -8,9 +8,8 @@
#include "Hash_Table.h"
void purge_dups(ma_ug_t *ug, asg_t *read_g, ma_sub_t* coverage_cut, ma_hit_t_alloc* reverse_sources,
R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, float density, uint32_t bi_graph_Len, uint32_t long_hap_overlap,
float lable_match_rate, int max_hang, int min_ovlp, long long bubble_dist, float drop_ratio,
uint32_t just_contain);
R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, float density, uint32_t purege_minLen, int max_hang,
int min_ovlp, long long bubble_dist, float drop_ratio, uint32_t just_contain);
void fill_unitig(uint64_t* buffer, uint32_t bufferLen, asg_t* read_g, kvec_asg_arc_t_warp* edge,
uint32_t is_circle, uint64_t* rLen);