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expose purge_dups

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chhylp123
2020-04-18 00:45:47 -04:00
parent 85c57fd087
commit 7f6725ead3
6 changed files with 117 additions and 36 deletions
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hifiasm.1
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@@ -236,11 +236,27 @@ but occurs <
times in the other sample.
.SS Purge-dups options
.TP 10
.BI -l \ INT
Level of purge-dup. 0 to disable purge-dup, 1 to only purge contained haplotigs,
2 to purge all types of haplotigs. In default, [2] for non-trio assembly, [0] for trio assembly.
For trio assembly, only level 0 and level 1 are allowed.
.TP
.BI -s \ FLOAT
Similarity threshold for duplicate haplotigs that should be purged [0.75].
.TP
.BI -O \ FLOAT
Min number of overlapped reads for duplicate haplotigs that should be purged [1].
.SS Debugging options
.TP 10
.B --dbg-gfa
Write additional files to speed up the debugging of graph cleaning
Write additional files to speed up the debugging of graph cleaning.
.SH OUTPUTS