r373

2026-10-06 19:58:12 +08:00 · 2021-09-10 17:17:44 -04:00
parent 17b5cb21d3
commit 809ca18dda
18 changed files with 1569 additions and 1031 deletions
@@ -4,7 +4,7 @@
 #include <pthread.h>
 #include <stdint.h>

-#define HA_VERSION "0.16.0-r369"
+#define HA_VERSION "0.16.1-r373"

 #define VERBOSE 0

@@ -21,6 +21,7 @@
 #define HA_F_HIGH_HET        0x400
 #define HA_F_PARTITION       0x800
 #define HA_F_FAST            0x1000
+#define HA_F_USKEW            0x2000

 #define HA_MIN_OV_DIFF       0.02 // min sequence divergence in an overlap

@@ -40,6 +41,7 @@ typedef struct {
 	char *extract_list;
    enzyme *hic_reads[2];
    enzyme *hic_enzymes;
+    enzyme *ar;
 	int extract_iter;
    int thread_num;
    int k_mer_length;