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chhylp123
2024-11-12 23:53:29 -05:00
parent 6de4e14782
commit 80fa5ed436
11 changed files with 1211 additions and 135 deletions
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htab.cpp
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@@ -692,6 +692,7 @@ static inline void sf##_pt_insert_buf(sf##_ch_buf_t *buf, int p, const HType *y)
static void *sf##_worker_count(void *data, int step, void *in) /** callback for kt_pipeline()**/\
{\
pl_data_t *p = (pl_data_t*)data;\
/**uint8_t src_a[1000000], des_a[1000000];**/\
if (step == 0) { /** step 1: read a block of sequences**/\
int ret;\
sf##_st_data_t *s;\
@@ -762,6 +763,16 @@ static void *sf##_worker_count(void *data, int step, void *in) /** callback for
++n_N;\
ha_compress_base(Get_READ(*p->rs_out, p->n_seq), p->ks->seq.s+p->opt->adaLen, l, &p->rs_out->N_site[p->n_seq], n_N);\
memcpy(&p->rs_out->name[p->rs_out->name_index[p->n_seq]], p->ks->name.s, p->ks->name.l);\
if(p->rs_out->rsc) {\
ha_compress_qual(Get_QUAL(*p->rs_out, p->n_seq), p->ks->qual.s+p->opt->adaLen, l, sc_bn, 33);\
/**print_fastq(NULL, p->ks->name.s, p->ks->seq.s, p->ks->qual.s, (1<<sc_bn), 33);**/\
/**if(l <= 1000000) {\
convert_qual(src_a, p->ks->qual.s+p->opt->adaLen, l, (1<<sc_bn), 0, 33);\
retrive_bqual(NULL, des_a, p->n_seq, -1, -1, 0, sc_bn);\
if(memcmp(src_a, des_a, l)!=0) fprintf(stderr, "ERROR: incorrect qual values\n");\
else fprintf(stderr, "Correct: correct qual values\n");\
}**/\
}\
}\
}\
if (s->n_seq == s->m_seq) {\