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new realignment

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chhylp123
2022-05-03 00:59:24 -04:00
parent fdf24d5589
commit 8138941a26
8 changed files with 728 additions and 116 deletions
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Process_Read.h
+3 -1
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@@ -167,7 +167,7 @@ typedef struct
typedef struct
{
uint32_t *a;
ssize_t n ,m;
size_t n, m;
} N_t;
typedef struct
@@ -232,5 +232,7 @@ uint32_t retrieve_u_cov(const ul_idx_t *ul, uint64_t id, uint8_t strand, uint64_
uint64_t retrieve_u_cov_region(const ul_idx_t *ul, uint64_t id, uint8_t strand, uint64_t s, uint64_t e, int64_t *pi);
uint64_t retrieve_r_cov_region(const ul_idx_t *ul, uint64_t id, uint8_t strand, uint64_t s, uint64_t e, int64_t *pi);
void append_ul_t_back(all_ul_t *x, uint64_t *rid, char* id, int64_t id_l, char* str, int64_t str_l, ul_ov_t *o, int64_t on, float p_chain_rate);
void write_compress_base_disk(FILE *fp, uint64_t ul_rid, char *str, uint32_t len, ul_vec_t *buf);
int64_t load_compress_base_disk(FILE *fp, uint64_t *ul_rid, char *dest, uint32_t *len, ul_vec_t *buf);
#endif