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new realignment

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chhylp123
2022-05-03 00:59:24 -04:00
parent fdf24d5589
commit 8138941a26
8 changed files with 728 additions and 116 deletions
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gfa_ut.cpp
+8 -2
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@@ -1411,9 +1411,15 @@ double ou_drop_rate, int64_t max_tip, bub_label_t *b_mask_t, int32_t is_ou, int3
// flat_bubbles(sg, ruIndex->is_het); free(ruIndex->is_het); ruIndex->is_het = NULL;
flat_soma_v(sg, src, rI);
///note: although the above functions will not change the UL part, but it will change the read graph
///so it is necessary to run update_sg_uo
if(is_ou) {
// hic_clean(sg);
// ul_realignment(uopt, sg);
update_sg_uo(sg, src);
}
if(is_ou) {
hic_clean(sg);
ul_realignment(uopt, sg);
// if(ul_refine_alignment(uopt, sg)) update_sg_uo(sg, src);
}
// print_node(sg, 17078); //print_node(sg, 8311); print_node(sg, 8294);