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fall back to avx2

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chhylp123
2026-04-01 22:28:54 -04:00
parent a137a6b06f
commit 815d709fb9
16 changed files with 1122 additions and 390 deletions
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Assembly.cpp
+4 -2
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@@ -2135,7 +2135,9 @@ int ha_assemble(void)
fprintf(stderr, "[M::%s::%.3f*%.2f@%.3fGB] ==> found overlaps for the final round\n", __func__, yak_realtime(), yak_cpu_usage(), yak_peakrss_in_gb());
// fprintf(stderr, "\n[M::%s::%.3f*%.2f@%.3fGB] ==> found overlaps for the final round\n", __func__, yak_realtime(), yak_cpu_usage(), yak_peakrss_in_gb());
// ha_print_ovlp_stat(R_INF.paf, R_INF.reverse_paf, R_INF.total_reads);
if(!(asm_opt.write_pos_idx)) ha_ft_destroy(ha_flt_tab);
if(!(asm_opt.write_pos_idx)) {
ha_ft_destroy(ha_flt_tab); ha_flt_tab = NULL;
}
if (asm_opt.flag & HA_F_WRITE_PAF) Output_PAF();
ha_triobin(&asm_opt);
@@ -2147,7 +2149,7 @@ int ha_assemble(void)
build_string_graph_without_clean(asm_opt.min_overlap_coverage, R_INF.paf, R_INF.reverse_paf,
R_INF.total_reads, R_INF.read_length, asm_opt.min_overlap_Len, asm_opt.max_hang_Len, asm_opt.clean_round,
asm_opt.gap_fuzz, asm_opt.min_drop_rate, asm_opt.max_drop_rate, asm_opt.output_file_name, asm_opt.large_pop_bubble_size, 0, !ovlp_loaded);
destory_All_reads(&R_INF);
destory_All_reads(&R_INF); if(asm_opt.dbg_bam) destroy_cc_v(&scb);
return 0;
}