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fall back to avx2

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chhylp123
2026-04-01 22:28:54 -04:00
parent a137a6b06f
commit 815d709fb9
16 changed files with 1122 additions and 390 deletions
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Makefile
+12 -3
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@@ -1,11 +1,11 @@
CXX= g++
CC= gcc
CXXFLAGS= -g -O3 -mavx512f -msse4.2 -mpopcnt -fomit-frame-pointer -Wall
CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall
CFLAGS= $(CXXFLAGS)
CPPFLAGS=
INCLUDES=
OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
POA.o Correct.o Levenshtein_distance.o Levenshtein_avx2.o Levenshtein_avx512.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
htab.o hist.o sketch.o anchor.o extract.o sys.o hic.o rcut.o horder.o ecovlp.o\
tovlp.o inter.o kalloc.o gfa_ut.o gchain_map.o
EXE= hifiasm
@@ -19,13 +19,22 @@ endif
.SUFFIXES:.cpp .c .o
.PHONY:all clean depend
all:$(EXE)
.cpp.o:
$(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@
.c.o:
$(CC) -c $(CFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@
all:$(EXE)
# compiled only with AVX2
Levenshtein_avx2.o: Levenshtein_avx2.cpp Levenshtein_distance.h
$(CXX) -c $(CXXFLAGS) -mavx2 $(CPPFLAGS) $(INCLUDES) $< -o $@
# compiled only with AVX512
Levenshtein_avx512.o: Levenshtein_avx512.cpp Levenshtein_distance.h
$(CXX) -c $(CXXFLAGS) -mavx512f $(CPPFLAGS) $(INCLUDES) $< -o $@
$(EXE):$(OBJS) main.o
$(CXX) $(CXXFLAGS) $^ -o $@ $(LIBS)