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fall back to avx2

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chhylp123
2026-04-01 22:28:54 -04:00
parent a137a6b06f
commit 815d709fb9
16 changed files with 1122 additions and 390 deletions
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Overlaps.cpp
+15 -2
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@@ -13918,6 +13918,10 @@ ma_hit_t_alloc* sources, R_to_U* ruIndex, int max_hang, int min_ovlp)
ug = ma_ug_gen(sg);
ma_ug_seq(ug, sg, coverage_cut, sources, &new_rtg_edges, max_hang, min_ovlp, 0, 1);
// if(asm_opt.dbg_bam) {
// gen_gfa_bam(ug);
// }
fprintf(stderr, "Writing raw unitig GFA to disk... \n");
char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.r_utg.gfa", output_file_name);
@@ -23743,6 +23747,11 @@ void write_all_data_to_disk(ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sou
sprintf(gfa_name, "%s.ovlp.reverse", output_file_name);
write_ma_hit_ts(reverse_sources, RNF->total_reads, gfa_name);
if(asm_opt.dbg_bam) {
sprintf(gfa_name, "%s.rec", output_file_name);
write_cc_v(&scb, gfa_name);
}
free(gfa_name);
fprintf(stderr, "bin files have been written.\n");
if(asm_opt.bin_only) exit(0);
@@ -23767,8 +23776,7 @@ int load_all_data_from_disk(ma_hit_t_alloc **sources, ma_hit_t_alloc **reverse_s
}
}
if((asm_opt.flag & HA_F_VERBOSE_GFA) && load_debug_graph(NULL, NULL, NULL, output_file_name, NULL, NULL, NULL))
{
if((asm_opt.flag & HA_F_VERBOSE_GFA) && load_debug_graph(NULL, NULL, NULL, output_file_name, NULL, NULL, NULL)) {
(*sources) = NULL;
(*reverse_sources) = NULL;
free(gfa_name);
@@ -23785,6 +23793,11 @@ int load_all_data_from_disk(ma_hit_t_alloc **sources, ma_hit_t_alloc **reverse_s
free(gfa_name);
return 0;
}
if(asm_opt.dbg_bam) {
sprintf(gfa_name, "%s.rec", output_file_name);
load_cc_v(&scb, gfa_name); ///write_ec_reads("lec.raw.fa", &scb, 0);
}
free(gfa_name);
if(asm_opt.write_pos_idx) {