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fall back to avx2

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chhylp123
2026-04-01 22:28:54 -04:00
parent a137a6b06f
commit 815d709fb9
16 changed files with 1122 additions and 390 deletions
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Process_Read.h
+6
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@@ -8,6 +8,7 @@
#include <zlib.h>
#include "Overlaps.h"
#include "CommandLines.h"
#include "Levenshtein_distance.h"
///#include "Hash_Table.h"
#define READ_INIT_NUMBER 1000
@@ -151,6 +152,9 @@ typedef struct
extern All_reads R_INF;
typedef struct {size_t n, m; asg16_v *a; uint8_t *f; uint16_t *er; uint64_t bid;} cc_v;
extern cc_v scb;
typedef struct
{
char* seq;
@@ -240,6 +244,8 @@ void destory_UC_Read(UC_Read* r);
void reverse_complement(char* pattern, uint64_t length);
void write_All_reads(All_reads* r, char* read_file_name);
int load_All_reads(All_reads* r, char* read_file_name);
uint8_t load_cc_v(cc_v* r, char* read_file_name);
void write_cc_v(cc_v* r, char* read_file_name);
int append_All_reads(All_reads* r, char *idx, uint32_t id);
void destory_All_reads(All_reads* r);
int destory_read_bin(All_reads* r);