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smaller cigar size

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chhylp123
2022-05-12 18:31:31 -04:00
parent a2198891e7
commit 832e43fe3b
3 changed files with 21 additions and 17 deletions
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Hash_Table.h
+3 -11
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@@ -44,29 +44,21 @@ typedef struct
uint64_t end_pos;
} k_mer_pos_list;
// typedef struct
// {
// int C_L[CIGAR_MAX_LENGTH];
// char C_C[CIGAR_MAX_LENGTH];
// int length;
// } CIGAR;
typedef struct
{
///the begining and end of a window, instead of the whole overlap
int32_t x_start, x_end;
int32_t y_start, y_end;
int32_t extra_begin, extra_end;
int32_t error, error_threshold;
int16_t extra_begin, extra_end;
int16_t error, error_threshold;
uint32_t cidx, clen;
//CIGAR cigar;
} window_list;
typedef struct
{
size_t n, m;
window_list *a;
kvec_t(uint32_t) c;
kvec_t(uint16_t) c;
} window_list_alloc;
typedef struct