xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-06 02:08:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

for v0.14

Browse Source
This commit is contained in:
chhylp123
2021-02-09 13:00:23 -05:00
parent fda13cb0e4
commit 8467d58ef1
7 changed files with 2928 additions and 925 deletions
Download Patch File Download Diff File Expand all files Collapse all files
CommandLines.h
+4 -3
View File
@@ -3,7 +3,7 @@
#include <pthread.h>
#define HA_VERSION "0.13-r308"
#define HA_VERSION "0.14-r309"
#define VERBOSE 0
@@ -35,7 +35,7 @@ typedef struct {
char *fn_bin_yak[2];
char *fn_bin_list[2];
char *extract_list;
char *hic_files[2];
enzyme *hic_reads[2];
enzyme *hic_enzymes;
int extract_iter;
int thread_num;
@@ -49,6 +49,7 @@ typedef struct {
double max_ov_diff_final;
int hom_cov;
int het_cov;
int break_cov;
int max_n_chain; // fall-back max number of chains to consider
int min_hist_kmer_cnt;
int load_index_from_disk;
@@ -106,7 +107,7 @@ static inline int ha_opt_triobin(const hifiasm_opt_t *opt)
static inline int ha_opt_hic(const hifiasm_opt_t *opt)
{
return ((opt->hic_files[0] && opt->hic_files[1]));
return ((opt->hic_reads[0] && opt->hic_reads[1]));
}
#endif