xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-10 05:20:56 +08:00
Code Issues Packages Projects Releases Wiki Activity

fix bubble on-the-fly

Browse Source
This commit is contained in:
chhylp123
2023-04-13 10:16:14 -04:00
parent 7e855ba5e2
commit 84e642d20d
6 changed files with 1012 additions and 110 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.h
+2 -2
View File
@@ -1066,7 +1066,7 @@ ma_ug_t* copy_untig_graph(ma_ug_t *src);
ma_ug_t* output_trio_unitig_graph(asg_t *sg, ma_sub_t* coverage_cut, char* output_file_name,
uint8_t flag, ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources,
long long tipsLen, float tip_drop_ratio, long long stops_threshold, R_to_U* ruIndex,
float chimeric_rate, float drop_ratio, int max_hang, int min_ovlp, int is_bench, bub_label_t* b_mask_t, char *f_prefix, uint8_t *kpt_buf, kvec_asg_arc_t_warp *r_edges);
float chimeric_rate, float drop_ratio, int max_hang, int min_ovlp, int gap_fuzz, int is_bench, bub_label_t* b_mask_t, char *f_prefix, uint8_t *kpt_buf, kvec_asg_arc_t_warp *r_edges);
asg_t* copy_read_graph(asg_t *src);
ma_ug_t *ma_ug_gen(asg_t *g);
void ma_ug_destroy(ma_ug_t *ug);
@@ -1135,7 +1135,7 @@ void adjust_utg_by_trio(ma_ug_t **ug, asg_t* read_g, uint8_t flag, float drop_ra
ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, ma_sub_t* coverage_cut,
long long tipsLen, float tip_drop_ratio, long long stops_threshold,
R_to_U* ruIndex, float chimeric_rate, float drop_ratio, int max_hang, int min_ovlp,
kvec_asg_arc_t_warp* new_rtg_edges, bub_label_t* b_mask_t);
int gap_fuzz, kvec_asg_arc_t_warp* new_rtg_edges, bub_label_t* b_mask_t);
uint32_t cmp_untig_graph(ma_ug_t *src, ma_ug_t *dest);
void reduce_hamming_error(asg_t *sg, ma_hit_t_alloc* sources, ma_sub_t *coverage_cut,
int max_hang, int min_ovlp, long long gap_fuzz);