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r246: made purge_dups optional for trio binning

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Heng Li
2020-04-15 23:57:18 -04:00
parent 57e979ca17
commit 85c57fd087
3 changed files with 12 additions and 7 deletions
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Overlaps.cpp
+5 -3
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@@ -13222,10 +13222,12 @@ kvec_asg_arc_t_warp* new_rtg_edges)
renew_utg(ug, read_g, new_rtg_edges);
delete_useless_nodes(ug);
purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang,
min_ovlp, bubble_dist, drop_ratio, 1);
delete_useless_nodes(ug);
if (asm_opt.flag & HA_F_PURGE_TRIO) {
purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang,
min_ovlp, bubble_dist, drop_ratio, 1);
delete_useless_nodes(ug);
}
set_drop_trio_flag(*ug);