clean contained read; fixed for deep_graph_clean

2026-09-15 12:47:57 +08:00 · 2023-03-07 15:28:24 -05:00
parent a0f2f70d91
commit 85c643e85d
9 changed files with 1027 additions and 37 deletions
--- a/Assembly.cpp
+++ b/Assembly.cpp
@@ -23,6 +23,7 @@ All_reads R_INF;
 Debug_reads R_INF_FLAG;
 all_ul_t UL_INF, ULG_INF;
 uint32_t *het_cnt = NULL;
+// uint32_t debug_out = 0;

 void get_corrected_read_from_cigar(Cigar_record* cigar, char* pre_read, int pre_length, char* new_read, int* new_length)
 {