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clean contained read; fixed for deep_graph_clean

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chhylp123
2023-03-07 15:28:24 -05:00
parent a0f2f70d91
commit 85c643e85d
9 changed files with 1027 additions and 37 deletions
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gfa_ut.h
+2
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@@ -3,6 +3,7 @@
#include "Overlaps.h"
#include "hic.h"
#define is_contain_r(ri, z) (((z)<(ri).len)&&((ri).index[(z)]!=(uint32_t)(-1))&&(!((ri).index[(z)]>>31)))
typedef struct {
asg_t *g;
@@ -37,5 +38,6 @@ void post_rescue(ug_opt_t *uopt, asg_t *sg, ma_hit_t_alloc *src, ma_hit_t_alloc
bubble_type *gen_bubble_chain(asg_t *sg, ma_ug_t *ug, ug_opt_t *uopt, uint8_t **ir_het);
void filter_sg_by_ug(asg_t *rg, ma_ug_t *ug, ug_opt_t *uopt);
void ug_ext_gfa(ug_opt_t *uopt, asg_t *sg, uint32_t max_len);
void update_sg_uo(asg_t *g, ma_hit_t_alloc *src);
#endif