xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-11 01:20:55 +08:00
Code Issues Packages Projects Releases Wiki Activity

avoid misassemblies; better polyploidy graph

Browse Source
This commit is contained in:
chhylp123
2023-03-22 12:23:53 -04:00
parent d4773a497f
commit 86b7dd424a
12 changed files with 1931 additions and 79 deletions
Download Patch File Download Diff File Expand all files Collapse all files
hic.h
+1 -1
View File
@@ -113,7 +113,7 @@ pdq* pqw, uint32_t* path_w, buf_t *resw, asg_t *sg, uint8_t *dest, uint8_t df, u
long long *dis);
void set_utg_by_dis(uint32_t v, pdq* pq, asg_t *g, kvec_t_u32_warp *res, uint32_t dis);
void dedup_hits(kvec_pe_hit* hits, uint64_t is_dup);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt, uint32_t is_poy, kvec_pe_hit **rhits);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt, mmhap_t **rh, kvec_pe_hit **rhits);
spg_t *hic_pre_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt, kvec_pe_hit **rhits);
void prt_bubble_gfa_adv(FILE *fp, bubble_type *bub, const char* utg_pre, const char* bub_pre, const char* chain_pre);
void bp_solve(ug_opt_t *opt, kv_u_trans_t *ref, ma_ug_t *ug, asg_t *sg, bubble_type *bub, double cis_rate);