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edit distance based error correction

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Haoyu Cheng
2019-07-07 03:44:59 -04:00
parent b553f3ac5e
commit 87873d6323
35 changed files with 3910 additions and 6 deletions
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Makefile
+1 -1
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@@ -3,7 +3,7 @@ CC=g++
CFLAGS = -w -c -msse4.2 -mpopcnt -fomit-frame-pointer -Winline -O3 -lz
LDFLAGS = -lm -lz -lpthread -O3 -mpopcnt -msse4.2 -lz -w
SOURCES = main.cpp CommandLines.cpp Process_Read.cpp Assembly.cpp kmer.cpp Hash_Table.cpp POA.cpp
SOURCES = main.cpp CommandLines.cpp Process_Read.cpp Assembly.cpp kmer.cpp Hash_Table.cpp POA.cpp Correct.cpp Levenshtein_distance.cpp edlib.cpp
OBJECTS = $(SOURCES:.c=.o)
EXECUTABLE = ccs_assembly