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edit distance based error correction

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Haoyu Cheng
2019-07-07 03:44:59 -04:00
parent b553f3ac5e
commit 87873d6323
35 changed files with 3910 additions and 6 deletions
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Process_Read.h
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@@ -111,6 +111,7 @@ void compress_base(uint8_t* dest, char* src, uint64_t src_l, uint64_t** N_site_l
void init_UC_Read(UC_Read* r);
void recover_UC_Read(UC_Read* r, All_reads* R_INF, uint64_t ID);
void recover_UC_Read_RC(UC_Read* r, All_reads* R_INF, uint64_t ID);
void recover_UC_Read_sub_region(char* r, long long start_pos, long long length, uint8_t strand, All_reads* R_INF, long long ID);
void destory_UC_Read(UC_Read* r);
void reverse_complement(char* pattern, uint64_t length);
void write_All_reads(All_reads* r, char* read_file_name);