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chhylp123
2021-01-01 04:50:42 -05:00
parent c545fd84c7
commit 88f5b11f04
5 changed files with 747 additions and 3954 deletions
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hic.h
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@@ -14,4 +14,25 @@ void push_hc_edge(hc_linkeage* x, uint64_t uID, int weight, int dir, uint64_t* d
void hic_analysis(ma_ug_t *ug, asg_t* read_g, hc_links* link);
void hic_benchmark(ma_ug_t *ug, asg_t* read_g);
typedef struct {
uint32_t* index;
ma_ug_t* ug;
kvec_t(uint32_t) list;
kvec_t(uint32_t) num;
kvec_t(uint64_t) pathLen;
kvec_t(uint64_t) b_s_idx;
uint64_t f_bub, b_bub;
asg_t *b_g;
} bubble_type;
#define P_het(B) ((B).num.n)
#define M_het(B) ((B).num.n + 1)
// #define IF_BUB(ID, B) ((B).index[(ID)] < (B).num.n)
// #define IF_HET(ID, B) ((B).index[(ID)] == (B).num.n)
// #define IF_HOM(ID, B) ((B).index[(ID)] > (B).num.n)
#define IF_BUB(ID, B) ((B).index[(ID)] < (B).f_bub+1)
#define IF_HET(ID, B) ((B).index[(ID)] == (B).f_bub+1)
#define IF_HOM(ID, B) ((B).index[(ID)] > (B).f_bub+1)
#define Get_bub_num(RECORD) ((RECORD).num.n-1)
void get_bubbles(bubble_type* bub, uint64_t id, uint32_t* beg, uint32_t* sink, uint32_t** a, uint32_t* n, uint64_t* pathBase);
#endif