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for debugging

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chhylp123
2020-10-11 14:32:33 -04:00
parent 7a314d1ef3
commit 89fcb35a64
9 changed files with 192 additions and 41 deletions
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htab.h
+8 -3
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@@ -29,6 +29,8 @@ extern void *ha_flt_tab;
extern ha_pt_t *ha_idx;
extern void *ha_flt_tab_hp;
extern ha_pt_t *ha_idx_hp;
extern void *ha_ct_table;
void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs, int *hom_cov, int is_hp_mode);
int ha_ft_isflt(const void *hh, uint64_t y);
@@ -38,8 +40,11 @@ ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_f
void ha_pt_destroy(ha_pt_t *h);
const ha_idxpos_t *ha_pt_get(const ha_pt_t *h, uint64_t hash, int *n);
int write_index(void *flt_tab, ha_pt_t *ha_idx, All_reads* r, hifiasm_opt_t* opt, char* file_name);
int load_index(void **r_flt_tab, ha_pt_t **r_ha_idx, All_reads* r, hifiasm_opt_t* opt, char* file_name);
int write_pt_index(void *flt_tab, ha_pt_t *ha_idx, All_reads* r, hifiasm_opt_t* opt, char* file_name);
int load_pt_index(void **r_flt_tab, ha_pt_t **r_ha_idx, All_reads* r, hifiasm_opt_t* opt, char* file_name);
int write_ct_index(void *ct_idx, char* file_name);
int load_ct_index(void **ct_idx, char* file_name);
int query_ct_index(void* ct_idx, uint64_t hash);
ha_abuf_t *ha_abuf_init(void);
void ha_abuf_destroy(ha_abuf_t *ab);
@@ -55,7 +60,7 @@ double yak_cpu_usage(void);
void ha_triobin(const hifiasm_opt_t *opt);
void ha_sketch(const char *str, int len, int w, int k, uint32_t rid, int is_hpc, ha_mz1_v *p, const void *hf);
void ha_sketch_query(const char *str, int len, int w, int k, uint32_t rid, int is_hpc, ha_mz1_v *p, const void *hf, kvec_t_u8_warp* k_flag);
void ha_sketch_query(const char *str, int len, int w, int k, uint32_t rid, int is_hpc, ha_mz1_v *p, const void *hf, kvec_t_u8_warp* k_flag, kvec_t_u64_warp* dbg_ct);
int ha_analyze_count(int n_cnt, const int64_t *cnt, int *peak_het);
static inline uint64_t yak_hash64(uint64_t key, uint64_t mask) // invertible integer hash function