xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

for debugging

Browse Source
This commit is contained in:
chhylp123
2020-10-11 14:32:33 -04:00
parent 7a314d1ef3
commit 89fcb35a64
9 changed files with 192 additions and 41 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
sketch.cpp
View File

@@ -139,12 +139,15 @@ void ha_sketch(const char *str, int len, int w, int k, uint32_t rid, int is_hpc,
void ha_sketch_query(const char *str, int len, int w, int k, uint32_t rid, int is_hpc, ha_mz1_v *p, const void *hf,
kvec_t_u8_warp* k_flag)
kvec_t_u8_warp* k_flag, kvec_t_u64_warp* dbg_ct)
{ ///in default, w = 51, k = 51, is_hpc = 1
/**
uint64_t x;
uint64_t rid:28, pos:27, rev:1, span:8;
**/
extern void *ha_ct_table;
if(dbg_ct != NULL) dbg_ct->a.n = 0;
static const ha_mz1_t dummy = { UINT64_MAX, 0, 0, 0 };
uint64_t shift1 = k - 1, mask = (1ULL<<k) - 1, kmer[4] = {0,0,0,0}, filtered;
int i, j, l, buf_pos, min_pos, kmer_span = 0;
@@ -201,6 +204,7 @@ kvec_t_u8_warp* k_flag)
filtered = 0;
if(hf != 0) filtered = ha_ft_isflt(hf, y);
if(dbg_ct != NULL) kv_push(uint64_t, dbg_ct->a, ((((uint64_t)(query_ct_index(ha_ct_table, y))<<1)|filtered)<<32)|(uint64_t)(i));
///if (hf == 0 || ha_ft_isflt(hf, y) == 0)
if(filtered == 0)
info.x = y, info.rid = rid, info.pos = i, info.rev = z, info.span = kmer_span;