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change ug extraction

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chhylp123
2021-12-12 20:59:48 -05:00
parent 9ec286e64e
commit 8a0ec3d575
5 changed files with 167 additions and 36 deletions
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15
Process_Read.cpp
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@@ -881,7 +881,6 @@ void append_ul_t(all_ul_t *x, uint64_t *rid, char* id, int64_t id_l, char* str,
}
}
void retrieve_ul_t(UC_Read* r, all_ul_t *ref, uint64_t ID, uint8_t strand) {
ul_vec_t *p = &(ref->a[ID]);
uc_block_t *b = NULL;
@@ -931,4 +930,18 @@ void retrieve_ul_t(UC_Read* r, all_ul_t *ref, uint64_t ID, uint8_t strand) {
}
for (k = 0; k < (int64_t)p->N_site.n; k++) r->seq[r->length - p->N_site.a[k] - 1] = 'N';
}
}
void retrieve_u_seq(UC_Read* i_r, char* i_s, ma_utg_t *u, uint8_t strand)
{
if(i_r) {
}
if (r->length + 4 > r->size)
{
r->size = r->length + 4;
r->seq = (char*)realloc(r->seq,sizeof(char)*(r->size));
}
}