purge_dups for high het

2026-10-10 19:10:55 +08:00 · 2021-03-08 20:52:11 -05:00
parent e8b92f7a40
commit 8aa87fdce8
8 changed files with 2766 additions and 1765 deletions
@@ -286,7 +286,8 @@ times in the other sample.
 .TP 10
 .BI -l \ INT
 Level of purge-dup. 0 to disable purge-dup, 1 to only purge contained haplotigs, 
-2 to purge all types of haplotigs. In default, [2] for non-trio assembly, [0] for trio assembly.
+2 to purge all types of haplotigs, 3 to purge all types of haplotigs in most aggressive way. 
+In default, [2] for non-trio assembly, [0] for trio assembly.
 For trio assembly, only level 0 and level 1 are allowed.

 .TP