diff --git a/README.md b/README.md index eb1ff54..d7ab9f2 100644 --- a/README.md +++ b/README.md @@ -30,6 +30,29 @@ produce primary/alternate assemblies of quality competitive with the best assemblers. It also introduces a new graph binning algorithm and achieves the best haplotype-resolved assembly given trio data. +## Why Hifiasm? + +* Hifiasm delivers high-quality assemblies. It tends to generate longer contigs + and resolve more segmental duplications than other assemblers. + +* Given sequence reads from the parents, hifiasm can produce overall the best + haplotype-resolved assembly so far. It is the assembler of choice by the + [Human Pangenome Project][hpp] for the first batch of samples. + +* Hifiasm can purge duplications between haplotigs without relying on + third-party tools such as purge\_dups. Hifiasm does not need polishing tools + like pilon or racon, either. This simplifies the assembly pipeline and saves + running time. + +* Hifiasm is fast. It can assemble a human genome in half a day and assemble a + ~30Gb redwood genome in three days. No genome is too large for hifiasm. + +* Hifiasm is trivial to install and easy to use. It does not required python, + R or C++11 compilers and can be compiled into a single executable. The + default setting works well with a variety of genomes. + +[hpp]: https://humanpangenome.org + ## Usage A typical hifiasm command line looks like: