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removed k_mer_pos_list_alloc

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Heng Li
2020-03-27 11:27:36 -04:00
parent 293f4b6b58
commit 8dbb4140bd
3 changed files with 1 additions and 60 deletions
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Assembly.cpp
+1 -12
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@@ -397,8 +397,6 @@ void* Overlap_calculate_heap_merge(void* arg)
init_Graph(&DAGCon);
init_Graph(&POA_Graph);
init_Candidates_list(&l);
k_mer_pos_list_alloc array_list;
init_k_mer_pos_list_alloc(&array_list);
overlap_region_alloc overlap_list;
init_overlap_region_alloc(&overlap_list);
@@ -425,7 +423,7 @@ void* Overlap_calculate_heap_merge(void* arg)
for (i = thr_ID; i < (long long)R_INF.total_reads; i = i + asm_opt.thread_num)
{
///get_new_candidates(i, &g_read, &overlap_list, &array_list, &heap, &l, THRESHOLD_RATE*1.5);
//get_new_candidates(i, &g_read, &overlap_list, &array_list, &heap, &l, THRESHOLD_RATE*1.5);
//get_new_candidates(i, &g_read, &overlap_list, &array_list, &l, 0.02, 1);
ha_get_new_candidates(ab, i, &g_read, &overlap_list, &l, 0.02, 1);
@@ -463,7 +461,6 @@ void* Overlap_calculate_heap_merge(void* arg)
destory_buffer_sub_block(&current_sub_buffer);
destory_Candidates_list(&l);
destory_overlap_region_alloc(&overlap_list);
destory_k_mer_pos_list_alloc(&array_list);
destory_Graph(&POA_Graph);
destory_Graph(&DAGCon);
destory_UC_Read(&g_read);
@@ -513,9 +510,6 @@ void* Output_related_reads(void* arg)
init_Candidates_list(&l);
//init_Candidates_list(&debug_l);
k_mer_pos_list_alloc array_list;
init_k_mer_pos_list_alloc(&array_list);
overlap_region_alloc overlap_list;
init_overlap_region_alloc(&overlap_list);
@@ -577,7 +571,6 @@ void* Output_related_reads(void* arg)
destory_buffer_sub_block(&current_sub_buffer);
destory_Candidates_list(&l);
destory_overlap_region_alloc(&overlap_list);
destory_k_mer_pos_list_alloc(&array_list);
destory_Graph(&POA_Graph);
destory_Graph(&DAGCon);
destory_UC_Read(&g_read);
@@ -1100,9 +1093,6 @@ void* Final_overlap_calculate_heap_merge(void* arg)
Candidates_list l;
init_Candidates_list(&l);
k_mer_pos_list_alloc array_list;
init_k_mer_pos_list_alloc(&array_list);
overlap_region_alloc overlap_list;
init_overlap_region_alloc(&overlap_list);
@@ -1156,7 +1146,6 @@ void* Final_overlap_calculate_heap_merge(void* arg)
destory_Candidates_list(&l);
destory_overlap_region_alloc(&overlap_list);
destory_k_mer_pos_list_alloc(&array_list);
destory_UC_Read(&g_read);
destory_UC_Read(&overlap_read);
destory_Cigar_record_alloc(&cigarline);