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removed k_mer_pos_list_alloc

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Heng Li
2020-03-27 11:27:36 -04:00
parent 293f4b6b58
commit 8dbb4140bd
3 changed files with 1 additions and 60 deletions
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35
Hash_Table.cpp
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@@ -687,41 +687,6 @@ void append_window_list(overlap_region* region, uint64_t x_start, uint64_t x_end
region->w_list_length++;
}
void init_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list)
{
list->size = 1000;
list->length = 0;
//list->list = (k_mer_pos_list*)malloc(sizeof(k_mer_pos_list)*list->size);
list->list = (k_mer_pos_list*)calloc(list->size, sizeof(k_mer_pos_list));
}
void clear_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list)
{
list->length = 0;
}
void destory_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list)
{
free(list->list);
}
void append_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list, k_mer_pos* n_list, uint64_t n_length,
uint64_t n_end_pos, uint8_t n_direction)
{
if (list->length + 1 > list->size)
{
list->size = list->size * 2;
list->list = (k_mer_pos_list*)realloc(list->list, sizeof(k_mer_pos_list)*list->size);
}
list->list[list->length].list = n_list;
list->list[list->length].length = n_length;
list->list[list->length].direction = n_direction;
list->list[list->length].end_pos = n_end_pos;
list->length++;
}
void test_single_list(Candidates_list* candidates, k_mer_pos* n_list, uint64_t n_lengh, uint64_t end_pos, uint64_t strand)
{
uint64_t i;