xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-06 04:08:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

bubble label

Browse Source
This commit is contained in:
chhylp123
2021-03-14 03:25:19 -04:00
parent 4c2ce6fc6b
commit 8e4b98f0a6
5 changed files with 1161 additions and 406 deletions
Download Patch File Download Diff File Expand all files Collapse all files
hic.cpp
+2 -2
View File
@@ -2566,14 +2566,14 @@ void identify_bubbles(ma_ug_t* ug, bubble_type* bub, hc_links* link)
if (!ug->g->is_symm) asg_symm(ug->g);
uint32_t v, n_vtx = ug->g->n_seq * 2, i, k, mode = (((uint32_t)-1)<<2);
uint32_t beg, sink, n, *a, n_occ;
uint64_t pathLen, tLen;
uint64_t pathLen;
bub->ug = ug;
for (i = 0, tLen = 1; i < ug->u.n; i++) tLen += ug->u.a[i].len;
bub->b_bub = bub->b_end_bub = bub->tangle_bub = bub->cross_bub = bub->mess_bub = 0;
if(bub->round_id == 0)
{
buf_t b; memset(&b, 0, sizeof(buf_t)); b.a = (binfo_t*)calloc(n_vtx, sizeof(binfo_t));
uint64_t tLen = get_bub_pop_max_dist_advance(ug->g, &b);
kv_init(bub->list); kv_init(bub->num); kv_init(bub->pathLen);
kv_init(bub->b_s_idx); kv_malloc(bub->b_s_idx, ug->g->n_seq);
bub->b_ug = NULL; kv_init(bub->chain_weight);