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Finish multiple thread counting

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This commit is contained in:
Haoyu Cheng
2019-05-12 02:16:20 -04:00
parent 94bd75e576
commit 9302fc6058
25 changed files with 1209 additions and 34 deletions
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4
CommandLines.cpp
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@@ -6,6 +6,7 @@
char* read_file_name = NULL;
char* output_file_name = NULL;
int thread_num = 1;
int k_mer_length = 40;
void Print_H()
{
@@ -29,11 +30,12 @@ int CommandLine_process (int argc, char *argv[])
ketopt_t opt = KETOPT_INIT;
int i, c;
while ((c = ketopt(&opt, argc, argv, 1, "ht:o:q:", longopts)) >= 0) {
while ((c = ketopt(&opt, argc, argv, 1, "ht:o:q:k:", longopts)) >= 0) {
if (c == 100 || c == 'h') Print_H();
else if (c == 103 || c == 't') thread_num = atoi(opt.arg);
else if (c == 102 || c == 'o') output_file_name = opt.arg;
else if (c == 101 || c == 'q') read_file_name = opt.arg;
else if (c == 'k') k_mer_length = atoi(opt.arg);
else if (c == '?') printf("unknown opt: -%c\n", opt.opt? opt.opt : ':');
else if (c == ':') printf("missing arg: -%c\n", opt.opt? opt.opt : ':');
}