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roughly right chaining

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chhylp123
2022-03-25 00:29:58 -04:00
parent 60236cd967
commit 95eb2de2b9
5 changed files with 305 additions and 100 deletions
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Process_Read.h
+2 -2
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@@ -183,7 +183,7 @@ typedef struct
kvec_t(uc_block_t) bb;
N_t N_site;
uint8_t h;
uint8_t dd;
} ul_vec_t;
typedef struct{
@@ -224,7 +224,7 @@ void recover_UC_sub_Read(UC_Read* i_r, long long start_pos, long long length, ui
void init_all_ul_t(all_ul_t *x, All_reads *hR);
void destory_all_ul_t(all_ul_t *x);
void append_ul_t(all_ul_t *x, uint64_t *rid, char* id, int64_t id_l, char* str, int64_t str_l, ul_ov_t *o, int64_t on);
void append_ul_t(all_ul_t *x, uint64_t *rid, char* id, int64_t id_l, char* str, int64_t str_l, ul_ov_t *o, int64_t on, float p_chain_rate);
void retrieve_ul_t(UC_Read* i_r, char *i_s, all_ul_t *ref, uint64_t ID, uint8_t strand, int64_t s, int64_t l);
void retrieve_u_seq(UC_Read* i_r, char* i_s, ma_utg_t *u, uint8_t strand, int64_t s, int64_t l, void *km);
void debug_retrieve_rc_sub(const ug_opt_t *uopt, all_ul_t *ref, const All_reads *R_INF, ul_idx_t *ul, uint32_t n_step);