xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-02 01:38:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

r181: limit the max number of chains

Browse Source
This commit is contained in:
Heng Li
2020-04-02 21:55:00 -04:00
parent 3838482851
commit 968b4caef9
9 changed files with 65 additions and 34 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Hash_Table.h
+8 -8
View File
@@ -67,15 +67,15 @@ typedef struct
typedef struct
{
window_list* buffer;
long long length;
long long size;
int32_t length;
int32_t size;
} window_list_alloc;
typedef struct
{
uint64_t* buffer;
uint64_t length;
uint64_t size;
uint32_t length;
uint32_t size;
} Fake_Cigar;
typedef struct
@@ -96,12 +96,12 @@ typedef struct
uint32_t align_length;
uint8_t is_match;
uint8_t without_large_indel;
int8_t strong;
uint32_t non_homopolymer_errors;
window_list* w_list;
uint64_t w_list_size;
uint64_t w_list_length;
int8_t strong;
uint32_t w_list_size;
uint32_t w_list_length;
Fake_Cigar f_cigar;
window_list_alloc boundary_cigars;
@@ -180,7 +180,7 @@ static inline long long y_start_offset(long long x_start, Fake_Cigar* o)
if(i == 0 || i == (long long)o->length)
{
fprintf(stderr, "ERROR\n");
fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
exit(0);
}