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r181: limit the max number of chains

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This commit is contained in:
Heng Li
2020-04-02 21:55:00 -04:00
parent 3838482851
commit 968b4caef9
9 changed files with 65 additions and 34 deletions
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Overlaps.cpp
+8 -8
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@@ -4333,7 +4333,7 @@ uint32_t startNode, uint32_t endNode)
}
else
{
fprintf(stderr, "ERROR\n");
fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
}
if(asg_arc_a(g, N_list[2])[0].v == (N_list[0]^1))
@@ -4346,7 +4346,7 @@ uint32_t startNode, uint32_t endNode)
}
else
{
fprintf(stderr, "ERROR\n");
fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
}
if(N_list[3] != N_list[4])
@@ -9028,7 +9028,7 @@ ma_sub_t *coverage_cut, int max_hang, int min_ovlp)
break;
}
}
if(k == nv) fprintf(stderr, "ERROR\n");
if(k == nv) fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
av = asg_arc_a(read_g, v);
nv = asg_arc_n(read_g, v);
@@ -9042,7 +9042,7 @@ ma_sub_t *coverage_cut, int max_hang, int min_ovlp)
}
}
if(k == nv) fprintf(stderr, "ERROR\n");
if(k == nv) fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
if(pE->el == 1 && aE->el == 1) continue;
@@ -9123,7 +9123,7 @@ ma_sub_t *coverage_cut, int max_hang, int min_ovlp)
}
l = asg_arc_len(t_f);
}
if(l == (uint32_t)-1) fprintf(stderr, "ERROR\n");
if(l == (uint32_t)-1) fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
/*******************************for debug************************************/
@@ -9172,7 +9172,7 @@ ma_sub_t *coverage_cut, int max_hang, int min_ovlp)
}
l = asg_arc_len(t_f);
}
if(l == (uint32_t)-1) fprintf(stderr, "ERROR\n");
if(l == (uint32_t)-1) fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
/*******************************for debug************************************/
@@ -19547,7 +19547,7 @@ void merge_ug_nodes(ma_ug_t *ug, asg_t* read_g, kvec_t_u64_warp* array)
if(aw[i].del) continue;
if(aw[i].v == (v^1)) break;
}
if(i == nw) fprintf(stderr, "ERROR\n");
if(i == nw) fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
kmp = kmp | (uint64_t)(aw[i].ol);
@@ -19578,7 +19578,7 @@ void merge_ug_nodes(ma_ug_t *ug, asg_t* read_g, kvec_t_u64_warp* array)
if(aw[i].del) continue;
if(aw[i].v == (v^1)) break;
}
if(i == nw) fprintf(stderr, "ERROR\n");
if(i == nw) fprintf(stderr, "ERROR at %s:%d\n", __FILE__, __LINE__);
kmp = kmp | (uint64_t)(aw[i].ol);