xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-10 13:10:55 +08:00
Code Issues Packages Projects Releases Wiki Activity

code clean

Browse Source
This commit is contained in:
chhylp123
2022-11-17 09:31:56 -05:00
parent 2c7b164f11
commit 9831afaf26
12 changed files with 1296 additions and 127 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.h
+4 -3
View File
@@ -32,7 +32,7 @@
// #define PRIMARY_LABLE 1
// #define ALTER_LABLE 2
// #define HAP_LABLE 4
#define HA_RE_UL_ID "re"
#define Get_qn(RECORD) ((uint32_t)((RECORD).qns>>32))
#define Get_qs(RECORD) ((uint32_t)((RECORD).qns))
@@ -880,7 +880,7 @@ ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, R_to_U* ruIndex, int m
void rescue_bubble_by_chain(asg_t *sg, ma_sub_t *coverage_cut, ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources,
long long tipsLen, float tip_drop_ratio, long long stops_threshold, R_to_U* ruIndex,
float chimeric_rate, float drop_ratio, int max_hang, int min_ovlp, uint32_t chainLenThres, long long gap_fuzz,
bub_label_t* b_mask_t);
bub_label_t* b_mask_t, long long no_trio_recover);
typedef struct{
double weight;
@@ -1140,7 +1140,8 @@ void hic_clean(asg_t* read_g);
int64_t count_edges_v_w(asg_t *g, uint32_t v, uint32_t w);
void renew_utg(ma_ug_t **ug, asg_t* read_g, kvec_asg_arc_t_warp* edge);
void merge_unitig_content(ma_utg_t* collection, ma_ug_t* ug, asg_t* read_g, kvec_asg_arc_t_warp* edge);
void reset_bub_label_t(bub_label_t* x, asg_t *g, uint64_t bub_dist, uint32_t check_cross);
void set_reverse_overlap(ma_hit_t* dest, ma_hit_t* source);
// void break_ug_contig(ma_ug_t **ug, asg_t *read_g, All_reads *RNF, ma_sub_t *coverage_cut,
// ma_hit_t_alloc* sources, R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, int max_hang, int min_ovlp,
// int* b_low_cov, int* b_high_cov, double m_rate);