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code clean

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chhylp123
2022-11-17 09:31:56 -05:00
parent 2c7b164f11
commit 9831afaf26
12 changed files with 1296 additions and 127 deletions
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rcut.h
+2 -1
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@@ -118,11 +118,12 @@ static inline double kr_drand_r(uint64_t *x)
return u.d - 1.0;
}
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub, kv_u_trans_t *ref, int clean_ov);
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub, kv_u_trans_t *ref, int clean_ov, int is_dump);
void debug_mc_g_t(const char* name);
void mc_solve_general(kv_u_trans_t *ta, uint32_t un, kv_gg_status *s, uint16_t hapN, uint16_t update_ta, uint16_t write_dump);
kv_gg_status *init_mc_gg_status(ma_ug_t *ug, asg_t *read_g, ma_sub_t* coverage_cut,
ma_hit_t_alloc* sources, R_to_U* ruIndex, uint64_t t_cov, uint16_t hapN);
void destory_mc_gg_t(mc_gg_t **p);
void debug_mc_gg_t(const char* fn, uint32_t update_ta, uint32_t convert_mc_g_t);
void quick_debug_phasing(const char* fn);
#endif