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update r313

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chhylp123
2021-03-18 05:26:33 -04:00
parent 3b4953521f
commit 98a04c168a
7 changed files with 62 additions and 177 deletions
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Overlaps.h
+2 -3
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@@ -1052,8 +1052,8 @@ typedef struct{
kvec_t(hc_linkeage) a;
kvec_t(uint64_t) enzymes;
kvec_t(bed_in) bed;
uint32_t* u_idx;
uint64_t r_num;
///uint32_t* u_idx;
///uint64_t r_num;
} hc_links;
@@ -1103,7 +1103,6 @@ ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, ma_sub_t* coverage_cut
long long tipsLen, float tip_drop_ratio, long long stops_threshold,
R_to_U* ruIndex, float chimeric_rate, float drop_ratio, int max_hang, int min_ovlp,
kvec_asg_arc_t_warp* new_rtg_edges, hc_links* link, bub_label_t* b_mask_t);
void collect_reverse_unitigs(buf_t* b_0, buf_t* b_1, hc_links* link, ma_ug_t *ug, asg_t *read_sg);
ma_ug_t* copy_untig_graph(ma_ug_t *src);
ma_ug_t* output_trio_unitig_graph(asg_t *sg, ma_sub_t* coverage_cut, char* output_file_name,
uint8_t flag, ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources,