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fixed memory issue within gen_single_khit

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chhylp123
2022-11-25 20:49:14 -05:00
parent 6de08fd91f
commit 9a454576e1
3 changed files with 18 additions and 21 deletions
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inter.cpp
+1 -5
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@@ -8927,7 +8927,7 @@ static void worker_for_ul_scall_alignment(void *data, long i, int tid) // callba
uint32_t high_occ = 2; overlap_region *aux_o = NULL;
// if(s->id+i != 901) return;
// if(s->id+i != 1052) return;
// fprintf(stderr, "[0M::%s] rid::%ld, len::%lu, name::%.*s\n", __func__, s->id+i, s->len[i],
// fprintf(stderr, "[M::%s] rid::%ld, len::%lu, name::%.*s\n", __func__, s->id+i, s->len[i],
// (int32_t)UL_INF.nid.a[s->id+i].n, UL_INF.nid.a[s->id+i].a);
// if (memcmp(UL_INF.nid.a[s->id+i].a, "d0aab024-b3a7-40fb-83cc-22c3d6d951f8", UL_INF.nid.a[s->id+i].n-1)) return;
// fprintf(stderr, "[M::%s::] ==> len: %lu\n", __func__, s->len[i]);
@@ -8938,10 +8938,6 @@ static void worker_for_ul_scall_alignment(void *data, long i, int tid) // callba
clear_Cigar_record(&b->cigar1);
clear_Round2_alignment(&b->round2);
// void ul_rid_lalign_adv(overlap_region_alloc* ol, Candidates_list *cl, const ul_idx_t *uref, const ug_opt_t *uopt,
// char *qstr, uint64_t ql, UC_Read* qu, UC_Read* tu, bit_extz_t *exz, overlap_region *aux_o, double e_rate,
// int64_t wl, kv_ul_ov_t *aln, int64_t sid, uint64_t khit, void *km)
ul_rid_lalign_adv(&b->olist, &b->clist, s->uu, s->uopt, s->seq[i], s->len[i], &b->self_read, &b->ovlp_read,
&b->exz, NULL, s->opt->diff_ec_ul, winLen, NULL, NULL, NULL, s->id+i, s->opt->k, NULL);