xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-11 04:30:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

resove tangle by hic

Browse Source
This commit is contained in:
chhylp123
2021-04-30 22:44:48 -04:00
parent 9b31d47379
commit 9c205c8271
3 changed files with 781 additions and 151 deletions
Download Patch File Download Diff File Expand all files Collapse all files
CommandLines.h
+1 -1
View File
@@ -4,7 +4,7 @@
#include <pthread.h> #include <pthread.h>
#include <stdint.h> #include <stdint.h>
#define HA_VERSION "0.15.1-r331" #define HA_VERSION "0.15.1-r333"
#define VERBOSE 0 #define VERBOSE 0
Overlaps.cpp
+8 -1
View File
@@ -12765,20 +12765,27 @@ long long gap_fuzz, bub_label_t* b_mask_t)
hic_analysis(ug, sg, cov?cov->t_ch:t_ch); hic_analysis(ug, sg, cov?cov->t_ch:t_ch);
char* gfa_name = (char*)malloc(strlen(output_file_name)+25); char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.d_utg.noseq.gfa", output_file_name); sprintf(gfa_name, "%s.clean_d_utg.noseq.gfa", output_file_name);
FILE* output_file = fopen(gfa_name, "w"); FILE* output_file = fopen(gfa_name, "w");
ma_ug_print_simple(ug, &R_INF, sg, coverage_cut, sources, ruIndex, "utg", output_file); ma_ug_print_simple(ug, &R_INF, sg, coverage_cut, sources, ruIndex, "utg", output_file);
fclose(output_file); fclose(output_file);
free(gfa_name); free(gfa_name);
if(cov) destory_hap_cov_t(&cov); if(cov) destory_hap_cov_t(&cov);
if(t_ch) destory_trans_chain(&t_ch); if(t_ch) destory_trans_chain(&t_ch);
ma_ug_destroy(ug); ma_ug_destroy(ug);
kv_destroy(new_rtg_edges.a); kv_destroy(new_rtg_edges.a);
asg_arc_t* av = NULL; asg_arc_t* av = NULL;
uint32_t v, w, k, i, nv; uint32_t v, w, k, i, nv;
for (i = 0; i < d_edges.a.n; i++) for (i = 0; i < d_edges.a.n; i++)
hic.cpp
+770 -147
View File
File diff suppressed because it is too large Load Diff