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intergration correctio

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chhylp123
2022-03-01 20:25:53 -05:00
parent 0ce5a7ba5b
commit 9c6a3607d1
8 changed files with 1263 additions and 77 deletions
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Correct.h
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@@ -1150,7 +1150,8 @@ void correct_ul_overlap(overlap_region_alloc* overlap_list, const ul_idx_t *uref
UC_Read* g_read, Correct_dumy* dumy, UC_Read* overlap_read,
Graph* g, Graph* DAGCon, Cigar_record* current_cigar,
haplotype_evdience_alloc* hap, Round2_alignment* second_round,
int force_repeat, int is_consensus, int* fully_cov, int* abnormal, double max_ov_diff_ec, void *km);
int force_repeat, int is_consensus, int* fully_cov, int* abnormal,
double max_ov_diff_ec, long long winLen, void *km);
/***
type: