xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-10 08:00:56 +08:00
Code Issues Packages Projects Releases Wiki Activity

intergration correctio

Browse Source
This commit is contained in:
chhylp123
2022-03-01 20:25:53 -05:00
parent 0ce5a7ba5b
commit 9c6a3607d1
8 changed files with 1263 additions and 77 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.h
+18 -2
View File
@@ -212,6 +212,10 @@ typedef struct {
uint32_t utg:31, ori:1, start, len;
} utg_intv_t;
typedef struct {
uint32_t x, s, e;
} utg_ct_t;
typedef struct {
uint32_t *idx;
kvec_t(uint64_t) interval;
@@ -219,13 +223,21 @@ typedef struct {
typedef struct {
kvec_t(uint64_t) idx;
kvec_t(uint32_t) rids;
kvec_t(utg_ct_t) rids;
kvec_t(uint8_t) is_c;
} ul_contain;
typedef struct {
ma_ug_t *ug;
asg_t *rg;
uint64_t *idx;
} cvert_t;
typedef struct {
ma_ug_t *ug;
ucov_t *cc;
ul_contain *ct;
// cvert_t *nug;
// kv_ul_ov_t *ov;
} ul_idx_t;
@@ -985,7 +997,9 @@ typedef struct{
int min_ovlp;
int is_bench;
long long gap_fuzz;
int64_t min_dp;
bub_label_t* b_mask_t;
uint64_t* readLen;
}ug_opt_t;
void adjust_utg_by_trio(ma_ug_t **ug, asg_t* read_g, uint8_t flag, float drop_rate,
@@ -1034,7 +1048,9 @@ uint32_t tn, kv_u_trans_hit_t* ktb, uint32_t bn);
void clean_u_trans_t_idx(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
uint32_t test_dbug(ma_ug_t* ug, FILE* fp);
void write_dbug(ma_ug_t* ug, FILE* fp);
asg_t *build_init_sg(ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, int64_t n_read,
int64_t min_dp, uint64_t* readLen, int64_t mini_overlap_length, int64_t max_hang_length,
ma_sub_t *coverage_cut, R_to_U* ruIndex);
#define JUNK_COV 5
#define DISCARD_RATE 0.8