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update polishing

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chhylp123
2020-10-18 17:59:31 -04:00
parent 753ea81194
commit 9d4e3b3283
5 changed files with 417 additions and 567 deletions
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Assembly.cpp
-24
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@@ -299,30 +299,6 @@ void push_overlaps(ma_hit_t_alloc* paf, overlap_region_alloc* overlap_list, int
}
}
int if_exact_match(char* x, long long xLen, char* y, long long yLen, long long xBeg, long long xEnd, long long yBeg, long long yEnd)
{
long long overlapLen = xEnd - xBeg + 1;
if(yEnd - yBeg + 1 == overlapLen)
{
long long i;
for (i = 0; i < overlapLen; i++)
{
if(x[xBeg + i] != y[yBeg + i])
{
break;
}
}
if(i == overlapLen)
{
return 1;
}
}
return 0;
}
long long push_final_overlaps(ma_hit_t_alloc* paf, ma_hit_t_alloc* reverse_paf_list, overlap_region_alloc* overlap_list, int flag)
{